HudsonAlpha researchers lead liverwort analysis

Genome analysis of early plant lineage sheds light on how plants learned to thrive on land.

Though it’s found around the world, it’s easy to overlook the common liverwort – the plant can fit in the palm of one’s hand and appears to be comprised of flat, overlapping leaves. Despite their unprepossessing appearance, these plants without roots or vascular tissues for nutrient transport are living links to the transition from the algae that found its way out of the ocean to the established multitude of land plants.

As reported in the October 5, 2017 issue of Cell, an international team including researchers at HudsonAlpha Institute for Biotechnology and the U.S. Department of Energy Joint Genome Institute (DOE JGI) analyzed the genome sequence of the common liverwort to identify genes and gene families that were deemed crucial to plant evolution and have been conserved over millions of years and across plant lineages. The work was led by researchers at Monash University in Australia and Kyoto University and Kindai University in Japan. Read more at jgi.doe.gov.

At CROPS 2017, SMRT Sequencing powers reference plant genome assemblies

This week, HudsonAlpha Institute for Biotechnology and the University of Georgia are co-hosting CROPS 2017, a meeting focused on
genomic technologies and their use in crop improvement and breeding programs.

The three-day event attracts more than 200 attendees involved in research and breeding for a range of important crop species. PacBio was proud to be a sponsor of the conference.

Continue reading “At CROPS 2017, SMRT Sequencing powers reference plant genome assemblies”

Coral sequencing at HudsonAlpha published in Current Biology

HudsonAlpha’s faculty investigators, Jeremy Schmutz and Jane Grimwood, PhD, are part of an international team of researchers who have concluded that one group coral could adapt to future climate changes because of their high genetic diversity. Schmutz and Grimwood, who are co-directors of the HudsonAlpha Genome Sequencing Center, performed the coral sequencing, helped with directions for the genome work and completed test assemblies of the data sets.

Continue reading “Coral sequencing at HudsonAlpha published in Current Biology”

Genome sequencing could save American chestnuts

The HudsonAlpha Institute for Biotechnology is generating and annotating a reference genome for the American chestnut tree in a project with The American Chestnut Foundation that aims to restore the once dominant tree to forests in the Eastern United States. We are all familiar with the opening lines of The Christmas Song: “Chestnuts roasting on an open fire …” But this collaborative project could mean that those chestnuts might once again come from an American chestnut tree.

Continue reading “Genome sequencing could save American chestnuts”

HudsonAlpha collaborators expand sorghum research program

A multi-institutional research effort aims to optimize breeding strategies for grain sorghum for sub-Saharan Africa

Huntsville, Ala. — HudsonAlpha Institute for Biotechnology, a nonprofit genomics and genetics research institute, and the Donald Danforth Plant Science Center, one of the world’s largest independent plant science institutes, today announced a three-year project to expand and accelerate the development and deployment of advanced sorghum phenotyping and breeding technologies in support of improved varieties for smallholder farmers. The project is funded by a $6.1 million grant to the Donald Danforth Plant Science Center from the Bill & Melinda Gates Foundation.

Continue reading “HudsonAlpha collaborators expand sorghum research program”

HudsonAlpha researchers receive federal grant to study potential biofuel

Huntsville, Ala. — Jeremy Schmutz, faculty investigator at the HudsonAlpha Institute for Biotechnology, has received a grant from the Department of Energy that will identify genes in a potential biofuel source. Schmutz, who co-directs the Genome Sequencing Center at HudsonAlpha, will analyze the natural genetic mechanisms of how switchgrass, a native prairie grass, adapts to its local environment. HudsonAlpha will receive $1.2 million over five years to complete the study.

Continue reading “HudsonAlpha researchers receive federal grant to study potential biofuel”

$2M awarded for Upland cotton genome sequence

Research will facilitate a new era of DNA-informed breeding and biology for cotton.

HudsonAlpha faculty investigator Jane Grimwood, Ph.D., will share a $2.4 million grant with four other researchers to continue genomics research on Upland cotton. Funded by the National Science Foundation, the research is intended to advance the groundbreaking discovery published in the April edition of Nature Biotechnology, which explained how researchers, including Chris Saski of Clemson University, decoded the genetic makeup of Upland cotton for the first time.

Continue reading “$2M awarded for Upland cotton genome sequence”

Genome Sequencing Center purchases advanced sequencing system for plant genomics

New DNA sequencing system provides highest accuracy, longest reads

Huntsville, Ala. — The HudsonAlpha Institute for Biotechnology has purchased the latest sequencing system, manufactured by Pacific Biosciences, for use in the Institute’s plant genomics research. The technology will enable the Institute’s Genome Sequencing Center to solve current, real-world problems facing agriculture today.

Continue reading “Genome Sequencing Center purchases advanced sequencing system for plant genomics”

HudsonAlpha, research partners awarded $8M to advance key bioenergy crop

Research to accelerate breeding and commercialization of bioenergy sorghum hybrids

Huntsville, Ala. — The HudsonAlpha Institute for Biotechnology, in collaboration with the Donald Danforth Plant Science Center and others, has been awarded an $8 million grant from the U.S. Department of Energy ARPA-E TERRA program to conduct research aimed at accelerating breeding and commercial release of economically viable bioenergy sorghum hybrids.

Continue reading “HudsonAlpha, research partners awarded $8M to advance key bioenergy crop”