Publications

 
McGuire, V., Van Den Eeden, S. K., Tanner, C. M., Kamel, F., Umbach, D. M., Marder, K., Mayeux, R., Ritz, B., Webster Ross, G., Petrovitch, H., Topol, B., Popat, R. A., Southwick, A., Myers, R. M. and Nelson, L. M.  (2010).  Association of DRD2 and DRD3 Polymorphisms with Parkinson’s Disease in a Multiethnic Consortium.  Neurol.  Submitted.

Casto, A. M., Ramachandran, S., Absher, D., Myers R. M. and Feldman, M. W.  (2010).  Signatures of selection on the human X chromosome.  Submitted.  

Landolin, J. M., Johnson, D. S., Trinklein, N. D., Aldred, S. F., Medina, C., Shulha, H., Weng, Z., Myers, R. M.  (2010).  Sequence features that drive human promoter function and tissue specificity.   Genome Res.  In press.  

Ding, F., Li, H. H., Li, J., Myers, R. M. and Francke, U.  (2010).  Neonatal starvation response and developmental changes in gene expression revealed by hypothalamic gene expression profiling in mice.   PLoS ONE. Feb 24; 5: e9402.  PMID: 20195375.  PMCID: PMC2827556.

Wang, C., Sanders, C. M., Yang, Q., Schroeder, Jr., H. W., Wang, E., Babrzadeh, F., Gharizadeh, B., Myers, R. M., Hudson, Jr., J. R., Davis, R. W. and Han, J.  (2010).  High throughput sequencing reveals a complex pattern of dynamic interrelationships among human T cell subsets.  Proc Natl Acad Sci USA. 107: 1518-1523.  PMID: 20080641.  [PubMed - as supplied by publisher].

Amemiya, C. T., Powers, T. P., Prohaska, S. J., Grimwood, J. Schmutz, J., Dickson, M., Miyake, T., Schoenborn, M. A., Myers, R. M., Ruddle, F. H. and Stadler, P. F.  (2010).  Complete HOX cluster characterization of the coelacanth provides further evidence for slow evolution of its genome.  Proc. Natl. Acad. Sci. USA. Published online before print February 5, 2010, doi:10.1073/pnas.0914312107.

Goode, D. L., Cooper, G. M., Schmutz, J., Dickson, M., Gonzales, E., Tsai, M., Karra, K., Davydov, E., Batzoglou, S., Myers, R. M. and Sidow, A.  (2010).  Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes.  Genome Res.  Jan 12. [Epub ahead of print].  PMID: 20067941.  [PubMed - as supplied by publisher].

Zakharia, F., Basu, A., Absher, D., Assimes, T. L., Go, A. S., Hlatky, M. A., Iribarren, C., Knowles, J. W., Li, J., Narasimhan, B., Sidney, S., Southwick, A., Myers, R. M., Quertermous, T., Risch, N., and Tang, H. (2009).  Characterizing the admixed African ancestry of African Americans.  Genome Biol.  10: R141.  [Epub ahead of print].  PMID: 20025784.  [PubMed - as supplied by publisher].
Chan, Y. F., Marks, M. E., Jones, F. C., Villarreal Jr., G., Shapiro, M. D., Fisher, S., Southwick, A. M., Absher, D. M., Grimwood, J., Schmutz, J., Myers, R. M., Petrov, D., Jónsson, B., Schluter, D., Bell, M. A. and Kingsley, D. M.  (2009).  Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer.  Science 327: 302-305.  PMID: 20007865.  [PubMed - as supplied by publisher].

Wheeler, H. E., Metter, E. J., Tanaka, T., Absher, D., Higgins, J., Zahn, J. M., Wilhelmy, J., Davis, R. W., Singleton, A. W., Myers, R. M., Ferrucci, L. and Kim, S. K.  (2009).  Sequential use of transcriptional profiling, expression quantitative trait mapping, and gene association implicates MMP20 in human kidney aging.  PLoS Genet. 5: e1000685.  doi:10.1371/journal.pgen.1000685.  PMID: 19834535.  PMCID - in process.
Martin, M. V., Rollins, B., Sequeira, P. A., Mesen, A., Byerley, W., Stein, R., Moon, E. A., Akil, H., Jones, E. G., Watson, S. J., Barchas, J., Delisi, L. E., Myers, R. M., Schatzberg, A., Bunney, W. E., and Vawter, M. P.  (2009).  Exon expression in lymphoblastoid cell lines from subjects with schizophrenia before and after glucose deprivation.  MC Med. Genomics 2: 62. [Epub ahead of print].  PMID: 19772658.  PMCID: PMC2760574.

The MGC Project Team, Temple, G., Jang, W., Wagner, L., Shenmen, C. M., Gerhard, D. S., Rasooly, R., Feingold, E. A., Good, P., Guyer, M., Robinson, C., Peck, A .M., Derge, J. G., Lewis, J., Shoaf, D., Collins, F. S., Misquitta, L., Schaefer, C. F., Buetow, K. H., Bonner, T. I., Yankie, L., Ward, M., Phan, L., Astashyn, A., Brown, G., Farrell, C., Hart, J., Landrum, M., Maidak, B., Murphy, M., Murphy, T., Rajput, B., Riddick, L., Webb, D., Weber, J., Wu, W., Pruitt, K. D., Maglott, D., Siepel, A., Brejova, B., Diekhans, M., Harte, R., Baertsch, R., Kent, J., Haussler, D., Brent, M., Langton, L., Comstock, C.L.G., Stevens, M., Wei, C., Salehi-Ashtiani, K., Murray, R. R., Ghamsari, L., Mello, E., Lin, C., Pennacchio, C., Schreiber, K., Shapiro, N., Marsh, A., Pardes, E., Moore, T., Lebeau, A., Muratet, M., Simmons, B., Kloske, D., Sieja, S., Hudson, J., Sethupathy, P., Brownstein, M., Bhat, N., Lazar, J., Gruber, C.E., Smith, M.R., McPherson, J., Garcia, A. M., Gunaratne, P. H., Wu, J., Muzny, D., Gibbs, R. A., Young, A. C., Bouffard, G. G., Blakesley, R. W., Mullikin, J., Green, E. D., Dickson, M. C., Rodriguez, A. C., Grimwood, J., Schmutz, J., Myers, R. M., Hirst, M., Zeng, T., Tse, K., Moksa, M., Deng, M., Ma, K., Mah, D., Pang, J., Taylor, G., Chuah, E., Deng, A., Fichter, K., Go, A., Lee, S., Wang, J., Griffith, M., Morin, R., Moore, R. A., Mayo, M., Munro, S., Wagner, S., Jones, S., Holt, R.A., Marra, M.A., Hartigan, J., Graf, M., Wagner, R., Letovsky, S., Pulido, J. C., Robison, K., Mulligan, J., Sheen, L., Esposito, D., Hartley, J. L., Wall, V. E., Hopkins, R. F., Ohara, O. and Wiemann, S.  (2009).  The completion of the Mammalian Gene Collection (MGC).  Genome Res. Sept. 18. [Epub ahead of print].  PMID: 19767417.  PMCID - in process.

Hesselson, S., Matsson, P., Shima, J., Fukushima, H., Yee, S. W., Kobayashi, Y., Gow, J., Ha, C., Ma, B., Poon, A., Johns, S., Stryke, D., Castro, D., Tahara, H., Choi, J. H., Chen, L., Picard, N., Sjödin, E., Roelofs, M., Ferrin, T., Myers, R. M., Kroetz, D., Kwok, P. Y., and Giacomini, K.  (2009).  Genetic variation in the proximal promoter of ABC and SLC superfamilies: Liver and kidney specific expression and promoter activity predict variation.  PLos One.  4: e6942.  PMID: 19742321 [PubMed - in process].

Kitano, J., Ross, J. A., Mori, S., Kume, M., Jones, F. C., Chan, Y. F., Absher, D. M., Grimwood, J., Schmutz, J., Myers, R. M., Kingsley, D. M. and Peichel, C. L.  (2009).  A role for a neo-sex chromosome in stickleback speciation.  Nature. Sep 27. [Epub ahead of print].  PMID: 19783981.  PMCID - in process.
165.  Reddy, T. E., Pauli, F., Sprouse, R. O., Neff, N. F., Newberry, K. M., Garabedian, M. J. and Myers, R. M.  (2009).  Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation.  Genome Res. 9: 2163-2171.  PMID: 19801529.  PMCID - in process.

Coop, G., Pickrell, J. K., Novembre, J., Kudaravalli, S., Li, J., Absher, D., Myers, R. M., Cavalli-Sforza, L. L., Feldman, M. W. and Pritchard, J. K.  (2009).  The role of geography in human adaptation.  PLoS Genet. 5: e1000500.  PMID: 19503611.  PMCID: PMC2685456.
163. Scott, L. J., Muglia, P., Kong, X. Q., Guan, W., Flickinger, M., Upmanyu, R., Tozzi, F., Li, J. Z., Burmeister, M., Absher, D., Thompson, R. C., Francks, C., Meng, F., Antoniades, A., Southwick, A. M., Schatzberg, A. F., Bunney, W. E., Barchas, J. D., Jones, E. G., Day, R., Matthews, K., McGuffin, P., Strauss, J. S., Kennedy, J. L., Middleton, L., Roses, A.D., Watson, S. J., Vincent, J. B., Myers, R. M., Farmer, A. E., Akil, H., Burns, D. K., and Boehnke, M.  (2009). Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry.  Proc. Natl. Acad. Sci. U.S.A.  106: 7501-7506.  [Epub 2009 Apr 28].  PMID: 19416921.  PMCID - in process.

Itsara, A., Cooper, G. M., Baker, C., Girirajan, S., Li, J., Absher, D., Krauss, R., Myers, R. M., Mefford, H., Cann, H. S., Singleton, A. A., Nickerson, D. A. and Eichler, E. E.  (2008).  Population Analysis of Large Copy Number Variants and Hotspots of Human Genetic Disease.  Am. J. Hum. Genet. 4: 148-161. PMID: 19166990.  PMCID - in process.

Pickrell, J. K., Coop, G., Novembre, J., Kudaravalli, S. Li, J., Absher, D., Srinivasan, B. S., Barsh, G. S., Myers, R. M., Feldman, M. W. and Pritchard, J. K.  (2009).  Signals of recent positive selection in a worldwide sample of human populations.  Genome Res. 19: 826-837. PMID: 19307593.  PMCID - in process.

Rollins, B., Martin, M. V., Sequeira, P. A., Moon, E. A., Morgan, L. Z., Watson, S. J., Schatzberg, A., Akil, H., Myers, R. M., Jones, E. G., Wallace, D. C., Bunney, W. E. and Vawter, M. P.  (2009).  Mitochondrial variants in schizophrenia, bipolar disorder, and major depressive disorder.  PLoS ONE.  4: e4913.  [Epub 2009 Mar 17].  PMCID - in process.

Brunner, A. L., Johnson, D. S., Kim, S. W., Valouev, A., Reddy, T. E., Neff, N. F., Anton, E., Medina, C., Nguyen. L., Chiao, E., Oyolu, C. B., Schroth, G. P., Absher, D., Baker, J. C. and Myers, R. M.  (2009).  Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver.  Genome Res. 19: 1044-1056.  Epub 2009 Mar 9.  PMID: 19273619.  PMCID - in process.
Ji, H., Jiang, H., Ma, W., Johnson, D. S., Myers, R. M., and Wong, W. H.  (2008).  An integrated system CisGenome for analyzing ChIP-chip and ChIP-seq data.  Nat. Biotechnol.  26: 1293-1300.  PMID: 18978777.  PMCID: PMC2596672.

Zhang, Y., Liu, T., Meyer, C. A., Eeckhoute, J., Johnson, D. S., Bernstein, B. E., Nussbaum, C., Myers, R. M., Brown, M., Li, W. and Liu, X. S.  (2008).  Model-based analysis of ChIP-Seq (MACS). Genome Biol.  9: R137.  PMID: 18798982.  PMCID: PMC2592715.
156. The Cancer Genome Atlas (TCGA) Research Network  (2008).  Comprehensive genomic characterization defines novel cancer genes and core pathways in human glioblastomas.  Nature.  455: 1061-1068.  PMID: 18772890.  PMCID: PMC2671642.

McGowan, K. A., Li, J. Z., Park, C. Y., Beaudry, V., Tabor, H. K., Sabnis, A. J., Zhang, W., Fuchs, H., Hrabe de Angelis, M., Myers, R. M., Attardi, L. D. and Barsh. G. S.  (2008).  Genetics of dark skin: ribosomal protein mutations act through p53.  Nat. Genet. 40: 963-970.  PMID: 18641651.  PMCID - in process.
Valouev, A., Johnson, D. S., Sundquist, A., Medina, C., Anton, E., Batzoglou, S., Myers, R. M. and Sidow, A.  (2008).  A statistical framework for genome-wide identification of transcription factor binding sites based on ChIP-seq data.  Nat. Methods.  5: 829-834.  PMID: 19160518.  PMCID - in process.

Assimes, T. L., Knowles, J. W., Basu, A., Iribarren, C., Southwick, A., Tang, H., Absher, D., Li, J., Fair, J. M., Rubin, G. D., Sidney, S., Fortmann, S. P., Go, A. S., Hlatky, M. A., Myers, R. M., Risch, N. and Quertermous, T.  (2008).  Susceptibility locus for clinical and subclinical coronary artery disease at chromosome 9p21 in the multi-ethnic ADVANCE Study.  Hum. Mol. Genet.  17: 2320-2328. PMID: 1844300.  PMCID: PMC2733811.

Shao, L., Martin, M. V., Watson, S. J., Schatzberg, A., Akil, H., Myers, R. M., Jones, E. G., Bunney W. E. and Vawter, M. P.  (2008).  Mitochondrial involvement in psychiatric disorders.  Ann. Med.  40: 281-295.  PMCID - in process.

*Li, J. Z., *Absher, D. M., Tang, H. Southwick, A. M., Casto, A. M., Ramachandran, S., Cann, H. M., Barsh, G. S., Feldman, M., Cavalli-Sforza, L. L. and Myers, R. M.  (2008).  Genome-wide characterization of genetic diversity in human populations.  Science.  319: 1100-1104.  (*co-first authors).  PMID: 18292342.  PMCID - in process.
Schroeder, D. I. and Myers, R. M.  (2008).  Multiple transcription start sites for FOXP2 with varying cellular specificities.  Gene.  413: 42-28.  PMID: 18316164.  PMCID - in process.

Johnson, D. S., Li, W., Gordon, D. B., Bhattacharjee, A., Curry, B., Ghosh, J., Brizuela, L., Carroll, J. S., Brown, M., Flicek, P., Koch, C., Dunham, I., Bieda, M., Xu, X., Farnham, P., Kapranov, P., Nix, D. A., Gingeras, T., Zhang, X., Holster, H., Jing, N., Green, R., Song, J., McCuine, S. A., Anton, E., Nguyen, L., Trinklein, N. D., Ye, Z., Ching, K., Hawkins, D., Ren, B., Scacheri1, P. C., Rozowsky, J., Karpikov, A., Euskirchen, G., Weissman, S., Gerstein, M., Snyder, M., Yang, A., Moqtaderi, Z., Hirsch, H., Shulha, H. P., Fu, Y., Weng, Z., Struhl, K., Myers, R. M., Lieb, J. D. and Liu, X. S. (2008).  Systematic evaluation of variability in simulated ChIP-chip experiments.  Genome Res.  18: 393-403. PMID: 18258921.  PMCID: PMC2259103.

Sequeira, A., Meng, F., Rollins, B., Myers, R. M., Jones, E. G., Watson, S. J., Akil, H., Schatzberg, A. F., Barchas, J., Bunney, W. E. and Vawter, M. P.  (2008).  Coding SNPs included in exon arrays for the study of psychiatric disorders.  Molec. Psych. 13: 363-365.  PMCID - in process.

Knowles, J. W., Wang, H., Itakura, H., Southwick, A., Myers, R. M., Iribarren, C., Fortmann, S. P., Go, A. S., Quertermous, T. and Hlatky, M. A.  (2007).  Association of polymorphisms in platelet and hemostasis system genes with acute myocardial infarction.  Am. Heart J.  154: 1052-1058. PMID: 18035074.

Hlatky, M. A., Ashley, E., Quertermous, T., Boothroyd, D. B., Ridker, P., Southwick, A., Myers, R. M., Iribarren, C., Fortmann, S. P. and Go, A. S.; for the Atherosclerotic Disease, Vascular Function and Genetic Epidemiology (ADVANCE) Study.  (2007).  Matrix metalloproteinase circulating levels, genetic polymorphisms, and susceptibility to acute myocardial infarction among patients with coronary artery disease.  Am. Heart J.  154: 1043-1051.  PMID: 18035073.

Hlatky, M. A., Quertermous, T., Boothroyd, D. B., Priest, J. R., Glassford, A. J., Myers, R. M., Fortmann, S. P., Iribarren, C., Tabor, H. K., Assimes, T. L., Tibshirani, R. J. and Go, A. S.  (2007).  Polymorphisms in hypoxia inducible factor 1 and the initial clinical presentation of coronary disease.  Am. Heart J.  154: 1035-1042.  PMID: 18035072.

Collins, P. J., Kobayashi, Y., Nguyen, L., Trinklein, N. D. and Myers, R. M.  (2007).  The ets-related transcription factor GABP directs bidirectional transcription.  PLoS Genet.  3(11): e208.  PMID: 18020712.  PMCID: PMC2077898.

Assimes, T. L., Knowles, J. W., Priest, J. R., Basu A., Borchert, A., Volcik, K. A., Grove, M. L., Tabor, H. K., Southwick, A., Tabibiazar, R., Sidney, S., Boerwinkle, E., Go, A. S., Iribarren, C., Hlatky, M. A., Fortmann, S. P., Myers, R. M., Kuhn, H., Risch, N. and Quertermous, T.  (2007).  A near null variant of 12/15-LOX encoded by a novel SNP in ALOX15 and the risk of coronary artery disease.  Atherosclerosis.  198: 136-144.  PMID: 17959182.

Li, J. Z., Meng, F., Tsavaler, L., Evans, S. J., Choudary, P. V., Tomita, H., Vawter, M. P., Walsh, D., Shokoohi, V., Chung, T., Bunney, W. E., Jones, E. G., Akil, H., Watson, S. J. and Myers, R. M.  (2007).  Sample matching by inferred agonal stress in gene expression analyses of the brain.  BMC Genomics 8: 336.  PMID: 17892578.

Atz, M., Walsh, D., Cartagena. P., Li, J., Evans, S., Choudary, P., Overman, K., Stein, R., Tomita, H., Potkin, S., Myers, R., Watson, S. J., Jones, E. G., Akil, H., Bunney, Jr., W. E., Vawter, M. P. and Members of National Institute of Mental Health Conte Center and Pritzker Neuropsychiatric Disorders Research Consortium.  (2007).  Methodological considerations for gene expression profiling of human brain.  J. Neurosci. Methods.  163: 295-309.  PMID: 1751205.

Karssen, A. M., Her, S., Li, J. Z., Patel, P. D., Meng, F., Bunney, Jr., W. E., Jones, E. G., Watson, S. J., Akil, H., Myers, R. M., Schatzberg, A. F. and Lyons, D. M.  (2007).  Stress-induced changes in primate prefrontal profiles of gene expression.  Mol. Psychiatry.  12: 1089-1102.  PMID: 17893703.

The ENCODE Project Consortium. (2007).  Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.  Nature.  447:  799-816.  See also:  News and Views by John M. Greally.  Nature.  447: 782-783.  PMID: 17571346.

Denoeud, F., Kapranov, P., Ucla, C., Frankish, A., Castelo, R., Drenkow, J., Lagarde, J., Alioto, T., Manzano, C., Chrast, J., Dike, S., Wyss, C., Henrichsen, C. N., Holroyd, N., Dickson, M. C., Taylor, R., Hance, Z., Foissac, S., Myers, R. M., Rogers, J., Hubbard, T., Harrow, J., Guigo, R., Gingeras, T. R., Antonarakis, S. E. and Reymond, A.  (2007).  Prominent use of distal 5’ transcription start sites and discovery of a large number of additional exons in ENCODE regions.  Genome Res.  17: 746-759.  PMID: 17567994.

Trinklein, N. D., Karaöz, U., Wu, J., Halees, A., Force Aldred, S., Collins, P. J., Zheng, D., Zhang, Z., Gerstein, M., Snyder, M., Myers, R. M. and Weng, Z.  (2007).  Integrated analysis of experimental datasets reveals many novel promoters in 1% of the human genome.  Genome Res.  17: 720-731.

Lin, J. M., Collins, P. J., Trinklein N. D., Fu, Y., Xi, H., Myers, R. M. and Weng, Z.  (2007).  Transcription factor binding and histone modifications in human bidirectional promoters.  Genome Res. 17: 818-827.  PMID: 17568000.

*Johnson, D. S., *Mortazavi, A., Myers, R. M. and Wold, B.  (2007).  Genome-wide mapping of in vivo protein DNA interactions.  Science. 316:  1497-1502.  See also: Perspective by Stanley Fields.  Science.  316: 1441-1442.  (*co-first authors).  PMID: 17540862.
Strehlow, A. T., Li, J. Z. and Myers, R. M.  (2007).  Wild-type huntingtin participates in protein trafficking between the Golgi and the extracellular space.  Hum. Molec. Genet.  16: 391-409.  PMID: 17189290.

Cooper, S. J., Trinklein, N. D., Nguyen, L. and Myers, R. M.  (2007).  Serum Response Factor binding sites differ in three human cell types.  Genome Res.  17: 136-144.  PMID: 17200232.

Elbaz, A., Nelson, L. M., Payami, H., Ioannidis, J. P. A., Fiske, B. K., Annesi, G., Carmine, A., Factor, S. A., Ferrarese, C., Hadjigeorgiou, G. M., Higgins, D., Kawakami, H., Krueger, R., Marder, K., Mayeux, R., Mellick, G., Nutt, J., Ritz, B., Samii, A., Tanner, C. M., Van Broeckhoven, C., Van Den Eeden, S. K., Wirdefeldt, K., Zabetian, C. P., Dehem, M., Montimurro, J.S., Southwick, A., Myers, R. M. and Trikalinos, T. A.  (2006).  Lack of replication of thirteen single-nucleotide polymorphisms implicated in Parkinson’s disease: a large-scale international study.  Lancet Neurol. 5: 917-923.  PMID: 17052658.

Mortazavi, A., Leeper Thompson, E. C., Garcia. S. T., Myers, R. M. and Wold, B.  (2006).  Comparative genomics modeling of the NRSF/REST repressor network: From single conserved sites to genome-wide repertoire.  Genome Res.  16: 1208-1221.  PMID: 16963704.

Vawter, M. P., Tomita, H., Meng, F., Bolstad, B., Li, J., Evans, S., Choudary, P., Atz, M., Shao, L., Neal, C., Walsh, D., Burmeister, M., Speed, T., Myers, R., Jones, E. G., Watson, S. J., Akil, H. and Bunney, Jr., W. E.  (2006).  Mitochondrial related gene expression changes are sensitive to agonal-pH state: Implications for brain disorders.  Mol. Psychiatry.  11: 615, 663-679.  PMID: 16636682.

Morin, R. D., Chang, E., Petrescu, A., Liao, N., Kirkpatrick, R., Griffith, M., Butterfield, Y. S., Stott, S., Barber, S., Babakaiff, R., Matsuo, C., Wong, D., Yang, G. S., Smailus, D. E., Brown-John, M., Mayo, M., Beland, J., Gibson, S., Olson, T., Tsai, M., Featherstone, R., Chand, S., Siddiqui, A. S., Jang, W., Lee, E., Klein, S. L., Prange, C., Myers, R. M., Green, E. D., Wagner, L., Gerhard, D. S., Marra, M. A., Jones, S. J. M. and Holt, R. A.  (2006). Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis.  Genome Res.  16: 796-803.  PMID: 16672307.

Cooper, S. J., Trinklein, N. D., Anton, E. D., Nguyen, L. and Myers, R. M.  (2006).  Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome.  Genome Res. 16: 1-10.  PMID: 16344566.

Dai, M., Wang, P., Boyd, A. D., Kostov, G., Athey, B., Jones, E. G., Bunney, Jr., W. E., Myers, R. M., Speed, T. P., Akil, H., Watson, S. J. and Meng, F.  (2005). Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data.  Nucleic Acids Res.  33: e175.  PMID: 16284200.

Choudary, P.V., Molnar, M., Evans, S. J., Tomita, H., Li, J.Z., Vawter, M.P., Myers, R. M., Bunney Jr., W. E., Akil, H., Watson, S. J. and Jones, E. G.  (2005).  Altered cortical glutamatergic and GABAergic signal transmission with glial involvement in depression.  Proc. Nat. Acad. Sci. USA.  102: 15653-15658.  PMID: 16230605.

Kopitar-Jerala, N., Schweiger, A., Myers, R. M., Turk, V. and Turk, B.  (2005).  Sensitization of stefin B-deficient thymocytes towards staurosporin-induced apoptosis is independent of cysteine cathepsins.  FEBS Lett. 579: 2149-2155.  PMID: 15811333.
Carlson, C. S., Force Aldred, S., Tracy, R. P., Schwartz, S. M., Rieder, M., Liu, K., Williams, O. D., Irribarren, C., Lewis, E. C., Fornage, M., Boerwinkle, E., Gross, M., Nickerson, D. A., Myers, R. M., Siscovick, D. S. and Reiner, A. P.  (2005).  Polymorphisms within the C Reactive Protein promoter region are associated with plasma CRP levels.  Am. J. Hum. Genet.  77: 64-77.  Erratum in: Am J Hum Genet. 2008 Jan;82(1):251.  PMID: 15897982.

Kim, T. H., Barrera, L. O., Qu, C., Van Calcar, S., Trinklein, N. D., Cooper, S. J., Luna, R., Glass, C. K., Rosenfeld, M. G., Myers, R. M. and Ren, B.  (2005). Direct isolation and identification of promoters in the human genome.  Genome Res.  15: 830-839.  PMID: 15899964.

Hillier, L. W., Graves, T. A., Fulton, R. S., Fulton, L. A., Pepin, K. H., Minx, P., Wagner-McPherson, C., Layman, D., Wylie, K., Sekhon, M., Becker, M. C., Fewell, G. A., Delehaunty, K. D., Miner, T. L., Nash, W. E., Kremitzki, C., Oddy, L., Du, H., Sun, H., Bradshaw-Cordum, H., Ali, J., Carter, J., Cordes, M., Harris, A., Isak, A., van Brunt, A., Nguyen, C., Du, F., Courtney, L., Kalicki, J., Ozersky, P., Abbott, S., Armstrong, J., Belter, E. A., Caruso, L., Cedroni, M., Cotton, M., Davidson, T., Desai, A., Elliott, G., Erb, T., Fronick, C., Gaige, T., Haakenson, W., Haglund, K., Holmes, A., Harkins, R., Kim, K., Kruchowski, S. S., Strong, C. M., Grewal, N., Goyea, E., Hou, S., Levy, A., Martinka, S., Mead, K., McLellan, M. D., Meyer, R., Randall-Maher, J., Tomlinson, C., Dauphin-Kohlberg, S., Kozlowicz-Reilly, A., Shah, N., Swearengen-Shahid, S., Snider, J., Strong, J. T. , Thompson, J., Yoakum, M., Leonard, S., Pearman, C., Trani, L., Radionenko, M., Waligorski, J. E., Wang, C., Rock, S. M., Tin-Wollam, A-M., Maupin, R., Latreille, P., Wendl, M. C., Yang, S-P., Pohl, C., Wallis, J. W., Spieth, J., Bieri, T. A., Berkowicz, N., Osborne, J., Ding, L., Meyer, R., Sabo, A., Shotland, Y., Sinha, P., Wohldmann, P. E., Cook, L. L., Hickenbotham, M. T., Eldred, J., Williams, D., Jones, T. A., She, X., Ciccarelli, F. D., Izaurralde, E., Taylor, J., Schmutz, J., Myers, R. M., Cox, D. R., McPherson, J. D., Mardis, E. R.,  Clifton, S. W., Warren, W. C., Chinwalla, A. T., Eddy, S. R., Marra, M. A., Ovcharenko, I., Furey, T. S., Miller, W., Eichler, E. E., Bork, P., Suyama, M., Torrents, D., Waterston, R. H. and Wilson, R. K.  (2005).  Generation and annotation of the DNA sequences of human chromosomes 2 and 4.  Nature.  434: 724-731.  PMID: 15815621.

Colosimo, P. F., Hosemann, K. E., Balabhadra, S., Villareal, G., Dickson, M., Grimwood, J., Schmutz, J., Myers, R. M., Schluter, D. and Kingsley, D. M.  (2005).  Widespread parallel evolution of stickleback armor plates determined by ancestral genetic variation in Ectodysplasin.  Science.  307: 1928-1933.  PMID: 15790847.

Martin, J., Han, C., Gordon, L. A., Terry, A., Prabhakar, S., She, X., Xie, G., Hellsten, U., Man Chan, Y-M., Altherr, M., Couronne, O., Aerts, A., Bajorek, E., Black, S., Blumer, H., Branscomb, E., Brown, N. C., Bruno, W. J., Buckingham, J. M., Callen, D. F., Campbell, C. S., Campbell, M. L., Campbell, E. W., Caoile, C., Challacombe, J. F., Chasteen, L. A., Chertkov, O., Chi, H. C., Christensen, M., Clark, L. M., Cohn, J. D., Denys, M., Detter, J. C.,  Dickson, M., Dimitrijevic-Bussod, M., Escobar, J., Fawcett, J. J., Flowers, D., Fotopulos, D., Glavina, T., Gomez, M., Gonzales, E., Goodstein, D., Goodwin, L. A., Grady, D. L., Grigoriev, I., Groza, M., Hammon, N., Hawkins. T., Haydu, L., Hildebrand, C. E., Huang, W., Israni, S., Jett, J., Jewett, P. E., Kadner, K., Kimball, H., Kobayashi, A., Krawczyk, M-C., Leyba, T., Longmire, J. L., Lopez, F., Lou, Y., Lowry, S., Ludeman, T., Mark, G. A., McMurray, K. L., Meincke, L. J., Morgan, J., Moyzis. R. K., Mundt, M. O., A. Munk, A. C., Nandkeshwar, R. D., Pitluck, S., Pollard, M., Predki, P., Parson-Quintana, B., Ramirez, L., Rash, S., Retterer, J., Ricke, D. O., Robinson, D. L., Rodriguez, A., Salamov, A., Saunders, E. H., Scott, D., Shough, T., Stallings, R. L., Stalvey, M., Sutherland, R. D., Tapia, R., Tesmer, J. G., Thayer, N., Thompson, L. S., Tice, H., Torney, D. C., Tran-Gyamfi, M., Tsai, M., Ulanovsky, L. E., Ustaszewska, A., Vo, N., White, P. S., Williams, A. L., Wills, P. L., Wu, J-R., Wu, K., Yang, J., DeJong, P., Bruce, D., Doggett, N., Deaven, L., Schmutz, J., Grimwood, J., Richardson, P., Rokhsar, D. S., Eichler, E. E., Gilna, P., Lucas, S. M., Myers, R. M., Rubin, E. M. and Pennacchio, L. A.  (2005). The sequence and analysis of duplication-rich human chromosome 16.  Nature.  432: 988-994.  PMID: 15616553.

Evans, S. J., Choudary, P. V., Neal, C. R., Li, J. Z., Vawter, M. P., Tomita, H., Lopez, J. F., Thompson, R. C., Meng, F., Stead, J. D., Walsh, D. M., Myers, R. M., Bunney, Jr., W. E., Watson, S. J., Jones, E. G. and Akil, H.  (2004).  Dysregulation of the fibroblast growth factor system in major depression.  Proc. Natl. Acad. Sci. USA. 101: 15506-15511.  PMID: 15483108.
 
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